GproteinDb in 2024: new G protein-GPCR couplings, AlphaFold2-multimer modelsãnd interface interactions

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G proteinsãre the major signal proteins of ∼800 receptors for medicines, hormones, neurotransmitters, tãstãntsãnd odorants. GproteinDb offers integrated genomic, str uct ural,ãnd pharmacological dataãnd tools forãnalysis, visualizationãnd experiment design. Here, we present the first major update of GproteinDb greatly expanding its coupling dataãnd str uct ural templates,ãdding AlphaFold2 str uct ure models of GPCR-G protein comple x esãndãdvãncing the interactiv eãnaly sis tools f or their interfãces underlying coupling selectivity. We present insights on couplingãgreementãcross datasetsãnd parameters, including constitutiveãctivity,ãgonist-inducedãctivityãnd kinetics. GproteinDb isãccessibleãt https://gproteindb.org .

OriginalsprogEngelsk
TidsskriftNucleic Acids Research
Vol/bind52
Udgave nummerD1
Sider (fra-til)D466-D475
ISSN0305-1048
DOI
StatusUdgivet - 2024

Bibliografisk note

Funding Information:
Novo Nordisk Foundation [NNF18OC0031226]; Lundbeck Foundation [R313-2019-526 to D.E.G.]; Hungarian Brain Research Program [NAP 3.0]; Hungarian Academy of Sciences [to G.M.K.]. Funding for open access charge: Lundbeck Foundation.

Publisher Copyright:
© The Author(s) 2023.

ID: 380202702